I agree with you on having to go with guesses. But it still did all that with a known good tps? I am guessing you need to replace it anyway, but like you I am kind of grasping at straws from a distance. Some leaks show up more under vibration. Cam timing can cause some pretty crazy vacuum losses as well. You said your clearances were loose. You have checked to see that the loosest measurements are right at TDC? rotate the crank back and forth some and see if they get looser than at tdc. for curiousity, what clearances do you have?